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Osaka University Graduate School of Engineering

PUBLICATIONS


Hisao Ohtake
Professor
Department of Biotechnology
Graduate School of Engineering

Education

B.A., 1973 Chemical Engineering, University of Tokyo, Tokyo, Japan.
M.S., 1975 Biochemical Engineering, University of Tokyo, Tokyo, Japan.
Dr., 1978 Biochemical Engineering, Osaka University, Osaka, Japan.

Professional/Research Appointments

2003-present Professor, Department of Biotechnology, Osaka University, Osaka, Japan
1990-2003 Professor, Department of Molecular Biotechnology, Hiroshima University, Hiroshima, Japan   
1983-1989 Associate Professor, University of Tokyo, Tokyo, Japan
1986-1987 Research Associate, University of Illinois College of Medicine, Chicago, Il., U.S.A.
1985-1986 Visiting Associate Professor, Washington University,St. Louis, Mo., U.S.A.
1980-1983 Associate Professor, Shimane University, Shimane, Japan
1978-1980 Assistant Professor, Shimane University, Shimane, Japan

Academic committees and Boards

- Chairman, Division of Biochemical Engineering, The Society of Chemical Engineers, Japan, 2002-2006
- President, Japan Society for Environmental Biotechnology, 2005-2007
- Chairman, Phosphorus Recycling Promotion Council of Japan, 2008-
- Editor, FEMS Microbiology Reviews, 2001-2003
- Editor, Applied Microbiology and Biotechnology, 2000-2002
- Editor-in-Chief of Journal of Bioscience and Bioengineering, 2007-2011

Awards

Japan Bioindustry Association Award 2008
Japan Society for Environmental Biotechnology Award 2010
Society for Biotechnology, Japan Award 2013

ORIGINAL PAPERS

ORIGINAL PAPERSList of selected papers
JUMP TO 1990-
JUMP TO 2000-
JUMP TO 2005-
JUMP TO 2010-
1. Aiba, S., Okada, M., Ohtake, H., Sudo, R. and Mori, T.
Simulation of BOD and DO balance in a shallow and polluted river (I) (in Japanese).
J. Jpn. Sewage Works Assoc. 12: No.131, 33-38 (1975).
2. Aiba, S., Okada, M., Ohtake, H., Sudo, R. and Mori, T.
Simulation of BOD and DO balance in a shallow and polluted river (II) (in Japanese).
J. Jpn.Sewage Works Assoc. 12: No.132, 26-37 (1975).
3. Sudo, R., Mori,T., Ohtake, H., Okada, M. and Aiba, S.
Algal growth potential of secondary treated sewage waters (in Japanese).
J. Jpn. Sewage Works Assoc. 12: No.133, 22-30 (1975).
4. Aiba, S., Ohtake, H. and Sudo, R.
Simulation of BOD and DO balance in a shallow and polluted river (III) (in Japanese).
J. Jpn. Sewage Works Assoc. 14: No.155, 47-53 (1977).
5. Aiba, S. and Ohtake, H.
Simulation of PO4-P balance in a shallow and polluted river.
Water Research 11: 159-164 ( 1977 )
6. Sudo, R., Ohtake, H., Aiba, S. and Mori, T.
Some ecological observations on the decomposition of periphytic algae and aquatic plants.
Water Research 12: 179-184 ( 1978 ).
18. Ohtake, H., Takahashi, K., Tsuzuki, Y. and Toda, K.
Uptake and release of phosphate by a pure culture of Acinetobacter calcoaceticus.
Water Research 19: 1587-1594 ( 1985 ).
22. Ohtake, H., Cervantes, C. and Silver, S.
Decreased chromate uptake in Pseudomonas fluorescens carrying a chromate
resistance plasmid.
J. Bacteriol. 169: 3853-3856 ( 1987 ).
26. Cervantes, C. and Ohtake, H.
Plasmid-determined resistance to chromate in Pseudomonas aeruginosa.
FEMS Microbiol. Lett. 56:173-176 ( 1988 ).
31. Komori, K., Wang, P., Toda, K. and Ohtake, H.
Factors affecting chromate reduction in Enterobacter cloacae.
Appl. Microbiol. Biotechnol. 31: 567-570 ( 1989 ).
32. Park, Y., Ohtake, H., Fukaya, M., Okumura, H., Kawamura, Y. and Toda, K.
Effects of dissolved oxygen and acetic acid concentrations on acetic acid production
in continuous culture of Acetobacter aceti.
J. Ferment. Bioeng. 68: 96-101 ( 1989 ).
35. Park, K., Ohtake, H., Toda, K., Fukaya, M., Okuma, H. and Kawamura, Y.
Acetic acid production using a fermenter equipped with a hollow fiber filter module.
Biotechnol. Bioeng. 33: 918-923 ( 1989 ).
36. Wang, P., Mori, T., Komori, K., Sasatsu, M., Toda, K. and Ohtake, H.
Isolation and characterization of an Enterobacter cloacae strain that reduces
hexavalent chromium under anaerobic conditions.
Appl. Enviorn. Microbiol. 55: 1665-1669 ( 1989 ).
41. Fujii, E., Toda, K. and Ohtake, H.
Fed-batch culture of Enterobacter cloacae strain HO1 to detoxify hexavalent chromium.
J. Ferment. Bioeng. 69: 365-367 ( 1990 ).
1990- JUMP TO TOP OF ORIGINAL PAPERS
43. Ohtake, H., Fujii, E. and Toda, K.
Reduction of toxic chromate in an industrial effluent by use of a chromate-reducing
strain of Enterobacter cloacae.
Environ. Technol. Lett. 11: 663-668 (1990).
44. Toda, K., Miyake, M. and Ohtake, H.
Enhanced oxygen absorption in shallow-flow surface culture.
J. Ferment. Bioeng. 70:114-118 (1990).
47. Ohtake, H., Fujii, E. and Toda, K.
Biological reduction of hexavalent chromium: kinetic aspects of chromate
reduction by Enterobacter cloacae HO1.
Biocatalysis 4:227-235 ( 1990 ).
49. Komori, K., Rivas, A., Toda, K. and Ohtake, H.
A method for removal of toxic chromium by use of dialysis sac cultures of
a chromate-reducing strain of Enterobacter cloacae.
Appl. Microbiol. Biotechnol. 33: 117-119 ( 1990 ).
50. Cervantes, C., Ohtake, H., Chu, L., Misra, T.K. and Silver, S.
Cloning, nucleotide sequence, and expression of the chromate resistance determinant of Pseudomonas aeruginosa plasmid pUM505.
J. Bacteriol. 172: 287-291 ( 1990 ).
51. Komori, K., Wang, P., Rivas, A., Toda, K. and Ohtake, H.
Biological removal of toxic chromium using an Enterobacter cloacae strain that reduces chromate under anaerobic conditions.
Biotechnol. Bioeng. 35: 951-954 ( 1990 ).
52. Wang, P., Mori, T., Toda, K. and Ohtake, H.
Membrane-associated chromate reductase activity from Enterobacter cloacae.
J. Bacteriol. 172: 1670-1672 ( 1990 ).
58. Nikata, T., Sumida, K., Kato, J. and Ohtake, H.
Rapid method for analyzing bacterial behavioral responses to chemical stimuli.
Appl. Environ. Microbiol. 58:2250-2254 ( 1992 ).
59. Kato, J., Ito, A., Nikata, T. and Ohtake, H.
Phosphate taxis in Pseudomonas aeruginosa.
J. Bacteriol. 174:5149-5151 ( 1992 ).
61. Yamamoto, K., Kato, J., Yano, T. and Ohtake, H.
Kinetics and modeling of hexavalent chromium reduction in Enterobacter cloacae.
Biotechnol. Bioeng. 41:129-133 (1993).
65. Kato, J., Yamada, K., Muramatsu, A., Hardoyo and Ohtake, H.
Genetic improvement of Escherichia coli for the enchanced biological removal of phosphate.
Appl. Environ. Microbiol. 59: 3744-3749 (1993).
64 Kato, J., Yamamoto, T., Yamada, K. and Ohtake, H.
Cloning, sequence and characterization of the polyphosphate kinase-encoding gene
(ppk) of Klebsiella aerogenes.
Gene 137: 237-242 (1993).
68. Kato, J., Sakai, Y., Nikata, T., and Ohtake, H.
Cloning and characterization of a Pseudomonas aeruginosa gene involved in the negative regulation of phosphate taxis.
J. Bacteriol. 176: 5874-5877 (1994).
70. Masduki, A., Nakamura, J., Ohga, T., Umezaki, R., Kato, J. and Ohtake, H.
Isolation and characterization of chemotaxis mutants and genes of Pseudomonas aeruginosa.
J. Bacteriol. 177:948-952 (1995).
72. Kuroda, A., Kumano, T., Taguchi, K., Nikata, T., Kato, J. and Ohtake, H.
Molecular cloning and characterization of a chemotactic transducer gene in Pseudomonas aeruginosa.
J. Bacteriol. 177:7019-7025 (1995).
73. Nikata, T., Sakai, Y., Shibata, K., Kato, J., Kuroda, A. and Ohtake, H.
Molecular analysis of the phosphate transport (pst) operon of Pseudomonas
aeruginosa.

Mol. Gen. Genet. 250: 692-698 (1996).
77. Taguchi, K., Fukutomi, H., Kuroda, A., Kato, J. and Ohtake, H.
Genetic identification of chemotactic transducers for amino acids in Pseudomonas aeruginosa.
Microbiology 143:3223-3229 (1997).
83. Kato, J., Nakamura, T., Kuroda, A. and Ohtake, H.
Cloning and characterization of chemotaxis genes in Pseudomonas aeruginosa.
Biosc. Biochem. Biotechnol. 63: 155-161 (1999).
86. Kuroda, A., Tanaka, S., Ikeda, T., Kato, J., Takiguchi, N. and Ohtake, H.
Inorganic polyphosphate kinase is required to stimulate protein degradation and adapt to amino acid starvation in Escherichia coli.
Proc. Natl. Acad. Sci. 96: 14264-14269 (1999).
2000- JUMP TO TOP OF ORIGINAL PAPERS
87. Hirota, R., Yamagata, A., Kato, J., Kuroda, A., Ikeda, T., Takiguchi, N. and Ohtake, H. Physical map location of the multicopy genes coding for ammonia monooxygenase and hydroxylamine oxidoreductase in the ammonia-oxidizing bacterium Nitrosomonas sp. strain ENI-11.
J. Bacteriol. 182: 825-828 (2000).
89. Yamagata, A., Hirota, R., Kato, J., Kuroda, A., Ikeda, T., Takiguchi, N. and Ohtake, H.
Mutational analysis of the multicopy hao gene coding for hydroxylamine
oxidoreductase in the ammonia-oxidizing bacterium Nitrosomonas sp. strain ENI-11.
Biosc. Biochem. Biotechnol. 64: 1754-1757 (2000).
90. Wu, H., Kato, J., Kuroda, A., Ikeda, T., Takiguchi, N. and Ohtake, H.
Identification and Characterization of Two Chemotactic Transducers for Inorganic
Phosphate in Pseudomonas aeruginosa.
J. Bacteriol. 182: 3400-3404 (2000).
91. Lee, S., Kato, J., Takiguchi, N., Kuroda, A., Ikeda, T., Mitsutani, A. and Ohtake, H.
Involvement of an extracellular protease in the algicidal activity of the marine
bacterium Pseudoalteromonas sp. strain A28.
Appl. Environ. Microbiol. 66: 4334-4339 (2000).
92. Kuroda, A., Kunimoto, H., Morohoshi, T., Ikeda, T., Kato, J., Takiguchi, N.,Miya, A.
and Ohtake, H.
Evaluation of phosphate removal from water by immobilized phosphate-binding
protein PstS.
J. Biosc. Bioeng. 90: 688-690 (2000).
93. Kato, J., Nagata, C., Yang, L., Kuroda, A., Ikeda, T., Takiguchi, N. and Ohtake, H.
Isolation and characterization of the Enterobacter cloacae cheR mutant defective in
phosphate taxis.
Biosc. Biochem. Biotechnol. 65: 456-458 (2001).
94. Tajima, T., Watanabe, N., Kogawa, Y., Takiguchi, N., Kato, J., Ikeda, T., Kuroda, A.
and Ohtake, H.
Chemotaxis by the nematode Caenorhabditis elegans toward quinine hydrochloride
and cycloheximide.
J. Biosc. Bioeng. 91: 322-324 (2001).
95. Ikeda, T., Kajiyama, K., Kita, T., Takiguchi, N., Kuroda, A., Kato, J. and Ohtake, H.
The optical resolution of synthetic N-acyl-homoserine lactone autoinducers and their
analogues.
Chem. Lett. 314-315 (2001).
96. Kuroda, A., Nomura,K., Ohtomo R., Kato, J., Ikeda, T., Takiguchi, N., Ohtake, H.
and Kornberg, A.
Inorganic polyphosphate: a molecular tag to identify ribosomal proteins for
degradation by Lon protease in E. coli.
Science 293: 705-708 (2001).
97. Tanaka, S., Kuroda, A., Kato, J., Ikeda, T., Takiguchi, N. and Ohtake, H.
A sensitive method for detecting AMP by utilizing polyphosphate-dependent ATP
generation and bioluminescence reactions.
Biochem. Eng. J. 9: 193-197 (2001).
98. Takiguchi N., Tajima T., Asayama K., Ikeda T., Kuroda A., Kato J. and Ohtake, H.
Behavioral responses of the ciliated protozoan Paramecium caudatum to 2,4-
dichlorophenoxyacetic acid and its analogues.
J. Biosci. Bioeng. 93: 416-420 (2002).
99. Morohoshi T., Maruo T., Shirai Y., Kato J., Ikeda T., Takiguchi N., Ohtake H. and
Kuroda A.
Accumulation of inorganic polyphosphate in phoU mutants of Escherichia coli and
Synechocystis sp. sain PCC6803.
Appl. Environ. Microbiol., 68: 4107-4110 (2002).
100. Kuroda A., Takiguchi N., Gotanda T., Nomura K., Kato J., Ikeda T., Ohtake H.
A simple method to release polyphosphate from activated sludge for phosphorus
reuse and recycling.
Biotechnol. Bioeng. 78: 333-338 (2002).
101. Lee S., Kato J., Nakashima K., Kuroda A., Ikeda T., Takiguchi, N., and Ohtake H.
Cloning and characterization of extracellular metal protease gene of the algicidal
marine bacterium Pseudoalteromonas sp. strain A28.
Biosci. Biotechnol. Biochem. 66: 1366-1369 (2002).
102. Hirota R., Kato J., Morita H., Kuroda A., Ikeda T., Takiguchi, N. and Ohtake H.
Isolation and characterization of cbbL and cbbS genes encoding form I ribulose-1,5-
bisphosphate carboxylase/oxygenase large and small subunits in Nitrosomonas sp. strain ENI-11.
Biosci. Biotechnol. Biochem. 66: 632-635 (2002).
103. Tsuji, T., Sakane, A., Fukuda, O., Kaneko, M. and Ohtake, H.
Bio-mimetic control of mobile robots based on a model of bacterial chemotaxis (in
Japanese).
Trans. JSME C68: 2687-2694 (2002).
104. Tsuji, T., Hashigami, K., Kaneko, M. and Ohtake, H.
Emerging chemotaxis of virtual bacteria using genetic algorithm (in Japanese).
Trans. IEE of Japan, 122-C: 201-207 (2002).
105. Shitashiro M., Jkato J., Fukumura T., Kuroda A., Ikeda T., Takiguchi N. and Ohtake H.
Evaluation of bacterial aerotaxis for its potential use in detecting the toxicity
of chemicals to microorganisms.
J. Biotechnol. 101: 11-18 (2003).
106. Morohoshi, T., Yamashita, T., Kato, J., Ikeda, T., Takiguchi, N., Ohtake, H., and Kuroda, A.
A method for screening polyphosphate-accumulating mutants which remove phosphate efficiently from synthetic wastewater.
J. Biosc. Bioeng. 95:637-640 (2003).
107. Ikeda T., Inoue Y., Suehiro A., Ikeshoji H., Ishida T., Takiguchi N., Kuroda A., Kato
J. and Ohtake H.
The Effects of Cyclodextrins on Autoinducer Activities of Quorum Sensing in
Pseudomonas aeruginosa.
J. Inclusion Phenomena, 44:381-382 (2003).
108. Takiguchi, N., Kuroda, A., Kato, J., Nukanobu, K. and Ohtake, H.
Pilot plant tests on the novel process for phosphorus recovery from municipal wastewater.
J. Chem. Eng. Japan, 36:1143-1146 (2003).
109. Tajima, T., Takiguchi, N., Kato, J., Ikeda, T., Kuroda, A. and Ohtake, H.
Mutants of the nematode Caenorhabditis elegans that are defective specifically in
their attraction to cycloheximide.
J. Biosc. Bioeng. 96:149-153 (2003).
110. Tanaka, S., Lee, S., Hamaoka, K., Kato, J., Takiguchi, N., Nakamura, K., Ohtake, H.
and Kuroda, A.
Strictly polyphosphate-dependent glucokinase in a polyphosphate-accumulating
bacterium Microlunatus phosphovorus.
J. Bacteriol. 185:5654-5656 (2003).
111. Hong, C.-S., Shitashiro, M., Kuroda, A., Ikeda, T., Takiguchi, N., Ohtake, H., and Kato, J.
Genetic identification of chemotaxis proteins and transducers for aerotaxis in Pseudomonas aeruginosa.
FEMS Microbiol. Lett. 231: 247-252 (2004).
112. Hong, C.-S., Kuroda, A., Ikeda, T., Takiguchi, N., Ohtake, H., and Kato, J.
The aerotaxis transducer gene aer, but not aer-2, is transcriptionally regulated by the
anaerobic regulator ANA in Pseudomonas aeruginosa.
J. Biosc. Bioeng. 97: 184-190 (2004).
113. Yang, L., Kuroda, A., Ikeda, T., Takiguchi, N., Ohtake, H., and Kato, J.
Characterization of pEC01, a novel plasmid required for phosphate taxis in Enterobacter cloacae IFO3320.
Microbes Environ. 19:45-52 (2004).
114. Takiguchi, N., Kishno, M., Kuroda, A., Kato, J., and Ohtake, H.
A laboratory-scale test of anaerobic digestion and methane production after phosphorus recovery from waste activated sludge.
J. Biosc. Bioeng., 97:365-368 (2004).
115. Sato, T., Kato, J., Takiguchi, N., Ohtake, H., and Kuroda, A.
Development of ultrasensitive bioluminescence assay of ATP: detection of a single
bacterial cell.
Biosci. Biotechnol. Biochem.,68:1216-1220 (2004).
116. Nomura, K., Kato, J., Takiguchi1, N., Ohtake, H., and Kuroda, A.
Effects of inorganic polyphosphate on the proteolytic and DNA-binding activities of Lon in Escherichia coli.
J. Biol. Chem.,279:34406-34410 (2004).
2005- JUMP TO TOP OF ORIGINAL PAPERS
117. Hong, C.-S., Kuroda, A., Takiguchi, N., Ohtake, H. and Kato, J.
Expression of Pseudomonas aeruginosa aer-2, One of Two Aerotaxis Transducer Genes, Is Controlled by RpoS.
J. Bacteriol., 187:1533-1535(2005).
118. Konishi, M., Kishimoto, M., Tamesui, N., Omasa, T., Shioya, S., and Ohtake, H.
theseparation of oil from an oil-water-bacteria mixture using a hydrophobic tubular membrane.
Biochem. Eng. J., 24: 49-54 (2005).
119. Konishi, M., Kishimoto, M., Omasa, T., Katakura, Y., Shioya, S., and Ohtake, H.
Effect of sulfur sources on specific desulfurization activity of Rhodococcus erythropolis
KA2-5-1 in exponential fed-batch culture
J.Biosc. Bioeng., 99:259-263(2005)
120. Na, K.-S., Kuroda, A.,Takiguchi, N., Ikeda, T., Ohtake, H., and Kato, J.
Isolation and characterization of benzene-tolerant Rhodococcus opacus strains
J. Biosc. Bioeng., 99: 378-382 (2005).
121. Na, K.-S., Kuroda, A.,Takiguchi, N., Ikeda, T., Ohtake, H., and Kato, J.
Development of a genetic transformation system for benzene-tolerant Rhodococcus
opacus strains.
J. Biosc. Bioeng., 99: 408-414 (2005).
122. Omasa, T., Kim, K., Hiramatsu, S., Katakura, Y., Kishimoto, M., Enosawa, S., and Ohtake, H.
Construction and evaluation of drug-metabolizing cell line for bioartificial liver support system.
Biotechnol. Prog., 21:161-167 (2005) .
123. Faizal, I., Dozen, K., Hong, C.-S., Kuroda, A., Takiguchi, N., Ohtake, H.. Takeda, K.,
Tsunekawa H., and Kato, J.
Isolation and characterization of solvent tolerant Pseudomonas putida strain T-57, and its application to biotransformation of toluene to cresol in a two-phase (organic-aqueous) system.
J. Ind. Microbiol. Biotechnol., 32: 542-547 (2005).
124. Hirano, A., Tsuji, T., Takiguchi, N., and Ohtake H.
Modeling of the membrane potential change of Paramecium for mechanical stimuli.
Trans. SICE, 41:351-357 (2005).
125. Shitashiro, M., Tanaka, H., Hong, C.-S., Kuroda, A., Takiguchi, N., Ohtake, H., and Kato, J.
Identification of Chemosensory Proteins for Trichloroethylene in Pseudomonas aeruginosa.
J. Biosc. Bioeng., 99: 396-402 (2005).
126. Suzuki, M., Goto, T., and Tsuji, T., and Ohtake, H.
A dynamic body model of the nematode C. elegans with neural oscillators.
J. Robot. Mechatron.,17: 318-326 (2005).
127. Suzuki, M., Tsuji, T., and Ohtake H.
A model of motor control of the nematode C. elegans with neuronal circuits.
Computer Intelligence Techniques in Bioinformatics
Artificial Intelligence in Medicine, .35: 75-86 (2005).
128. H. Kurata, H. El-Samad, R. Iwasaki, H. Ohtake, J. C. Doyle, I. Grigorova,C. A.
Gross, M. Khammash
Module-Based Analysis of Robustness Tradeoffs in the Heat Shock Response System.
PLoS Comput. Biol., 2: 663-675 (2006).
129. Nomura, K., Kato, J., Takiguchi, N., Ohtake, H., and Kuroda, A.
Inorganic polyphosphate stimulates Lon-mediated proteolysis of nucleoid proteins in Escherichia coli.
Cell. Mol. Biol., 52: 23-29 (2006).
130. Hisao Ohtake, Shiho Yamashita, Junichi Kato
Development of a new biotechnological basis for improving industrial sustainability of Japan.
Eng. Life Sci., 6: 278-284 (2006).
131. N. Izawa, M. Kishimoto, K. Konishi, T. Omasa, S. Shioya, H. Ohtake.
Recognition of Culture State Using Two-dimensional Gel Electrophoresis with an Artificial Neural Network.
Proteomics, 6: 3730-3738 (2006).
132. K. Motomura, N. Takiguchi, H. Ohtake, A. Kuroda
Polyamines affect polyphosphate accumulation in Escherichia coli.
J. Environ. Biotechnol., 6: 41-46 (2006).
133. Hirota, R., Kuroda, A., Ikeda, T., Takiguchi, N., Ohtake, H., and Kato, J.
Transcriptional Analysis of the multicopy hao gene coding for hydroxylamine oxidoreductase in Nitrosomonas sp. strain ENI-11.
Biosci. Biotechnol. Biochem., 70: 1875-1881, 2006.
134. H.-E. Kim, M. Shitashiro, A. Kurda, N. Takiguchi, H. Ohtake, J. Kato
Identification and characterization of the chemotactic transducer in Pseudomonas aeruginosa PAO1 for positive chemotaxis to trichloroethylene.
J. Bacteriol.,188: 6700-6702 (2006).
135. Hirano, A., Tsuji, T., Takiguchi, N., and Ohtake, H.
Simulation for chemotactic response of Paramecium using virtual Paramecium.
Trans. SICE, 42: 1252-1259 (2006).
136. Hirano, A., Tsuji, T., Takiguchi, N., and Ohtake, H.
Biomimeticcontrol of mobile robots based on the chemotactic response model of Paramecium.
Trans. JSME. 73: 2757-2764 (2007).
137. Yamashita, S., Sameshima, Y., Konishi, M., Kato, J., Kishimoto, M., Honda, K., Omasa, K., and Ohtake, H.
Integrated biooxidation and acid dehydration process for monohydroxylation of aromatics.
Process Biochem., 42: 46-51 (2007).
138. Takiguchi, N., Kishino, M., Kuroda, A., Kato. J., Ohtake, H.
Effect of Mineral Elements on Phosphorus Release from Heated Sewage Sludge.
Biores. Technol., 98: 2533-2537 (2007).
139. Yamashita, S. Satoi, M., Honda, K., Samejima, Y., Omasa, T., Kato, J., and Ohtake, H.
Utilization of hydrophobic bacterium Rhodococcus opacus Strain B-4 as whole-cell biocatalyst in anhydrous organic solvents
Appl. Microbiol. Biotechnol., 74: 761-767 (2007).
140. Ishida, T., Ikeda, T., Takiguchi, N., Kuroda, A., Ohtake, H., Kato, J.
Inhibition of quorum sensing in Pseudomonas aeruginosa by N-acyl cyclopentylamides.
Appl. Environ. Microbiol., 73: 3183-3188 (2007).
141. Iwamoto, S., Motomura, K., Shinoda, Y., Urata, M., Kato, J., Takiguchi, N., Ohtake, H., Hirota, R., and Kuroda, A.
Use of an Escherichia coli recombinant producing thermostable polyphosphate kinase as an ATP regenerator to produce fructose 1,6-diphosphate.
Appl. Environ. Microbiol., 73: 5676-5678 (2007).
142. Faizal, I., Ohba, M., Kuroda, A., Takiguchi, N., Ohtake, H., Honda, K., and Kato J.
Bioproduction of 3-methylcatechol from toluene in two-phase (organic-aqueous) system by a genetically modified solvent-tolerant Pseudomonas putida strain T-57.
J. Environ. Biotechnol., 7: 39-44 (2007).
143. Soh, Z., Tsuji, T., Takiguchi, N., and Ohtake, H.
A Neural Network Model of the Olfactory System of Mice: Simulated Tendency of Attention Behavior.
Artificial Life and Robotics, 13: 280-285 (2007).
144. Ohya, T., Hayashi, T., Kiyama, E., Nishii, H., Miki, H., Kobayashi, K., Honda, K., Omasa, T. and Ohtake, H.
Improved production of recombinant human antithrombin III in Chinese hamster ovary cells by ATF4 overexpression.
Biotechnol. Bioeng. 100: 317-324 (2008).
145. Takiguchi, N., Okuhara, K., Kuroda, A., Kato, J. and Ohtake, H.
Performance of mice in discrimation for liquor odrors: Behavioral evidence for olfactory attention.
Chem. Senses, 33: 283-290 (2008).
146. Kato, J., Kim, H., Takiguchi, N., Kuroda, A., and Ohtake, H.
Pseudomonas aeruginosa as a model microorganism for investigation of chemotactic
behaviors in ecosystem.
J. Biosc. Bioeng., 106: 1-7 (2008)
147. Honda, K., Yamashita, S., Nakagawa, H., Sameshima, Y., Omasa, T., Kato, J., and Ohtake, H.
Stabilization of water-in-oil emulsion by Rhodococcus opacus B-4 and its application to biotransformation.
Appl. Microbiol. Biotechnol., 78: 767-773 (2008).
148. Soh, Z., Tsuji, T., Suzuki, M., Takiguchi, N. And Ohtake, H.
A Neural Network Model of the Olfactory System of Mice: Computer Simulation of
the Attention Behavior of mice for some components in an odor.
Artificial Life and Robotics, 12: 75-80, 2008 (2008).
149. Omasa, T., Doi, T., Tanaka, R., Ando, M., Kitamoto, Y., Honda, K., Kishimoto, M., and Ohtake, H.
Control of antithrombion III fucosylation by expressing GDP-fucose transporter siRNA in Chinese hamster ovary cells.
J. Biosci. Bioeng., 106: 168-173 (2008).
150. Sameshima, Y., Honda, K., Kato, J., Omasa, T., and Ohtake, H.
Expression of Rhodococcus opacus alkB genes in anhydrous organic solvents.
J. Biosci. Bioeng., 106: 199-203 (2008).
151. Hamada, T., Sameshima, Y., Honda, K., Omasa, T., Kato, J., and Ohtake, H.
A comparison of various methods to predict bacterial predilection for organic solvents used as reaction media.
J. Biosci. Bioeng., 106:357-362 (2008).
152. Omasa, T., Takami, T., Ohya, T., Kiyama, E., Hayashi, T., Nishii, H., Miki, H., Kobayashi, K., Honda,K., and Ohtake, H.
Overexpression of GADD34 enhances production of recombinant human antithrombin III in Chinese hamster ovary cells.
J. Biosci. Bioeng., 106:568-573 (2008).
153. Gaoa M.-T., Shimamura, T., Ishida, N., Nagamori, E.,Takahashia, H., Umemoto, S., Omasa, T. and Ohtake, H.
Extractive lactic acid fermentation with tri-n-decylamine as the extractant.
Enzy. Microb.Technol., 44:350-354 (2009).
154. Hamada, T., Maeda, Y., Matsuda, H., Sameshima, Y., Honda, K., Omasa, T., Kato, J. and Ohtake, H.
Effect of cell-surface hydrophobicity on bacterial conversion of water-immiscible chemicals in two-liquid-phase culture systems
J. Biosci. Bioeng., 108: 116-120 (2009).
155. Omasa, T., Cao, Y., Park, J-Y., Takagi, Y., Yano, H., Honda, K., Asakawa, S., Shimizu, N., and Ohtake, H.
Bacterial artificial chromosome library for genome-wide analysis of Chinese hamster overy cells.
Biotechnol. Bioeng., 104: 986-994 (2009).
156. Vangnai, A., Kongpol, A., Pongtharangkul, T., Kato, J., Honda, K., Ohtake, H.
Characterization of an organic-solvent tolerant Brevibacillus agri strain 13 able to stabilize solvent/water emulsion.
FEMS Microbiol. Lett., 297: 225-233 (2009).
157. Soh, Z., Tsuji, T., Takiguchi, N., and Ohtake, H.,
Neuro-based Olfactory Model for Artificial Organoleptic Tests.
Artificial Life and Robotics, 14: 474-479 (2009).
2010- JUMP TO TOP OF ORIGINAL PAPERS
158. W.-D. Kim, M. Tokunaga, H. Ozaki, T. Ishibashi, K. Honda, H. Kajiura, K.Fujiyama,R.Asano, I. Kumagai, T. Omasa, and H. Ohtake
Glycosylation pattern of humanized IgG-like bispecific 1 antibody produced by recombinant CHO cells.
Appl. Microbiol. Biotechnol., 85:535?542 (2010).
159. Tsuji, T., Suzuki, M., Takiguchi, N., and Ohtake, H.
Biomimetic control based on a model of chemotaxis in Escherichia coli.
Artificial Life, 16(2): 155-177 (2010).
160. Hirota, R., Kuroda, A., Kato, J. and Ohtake, H.
Bacterial phosphate metabolism and its use for phosphorus recycling and industrial bioprocesses (Review).
J. Biosc. Bioeng., 109: 423-432 (2010).
161. Park, J.-Y., Takagi, Y., Yamatani, M., Honda, K., Asakawa, S., Shimizu, N., Omasa T., and Othake, H.
Identification and analysis of specific chromosomal region adjacent to exogenous Dhfr-amplified region in Chinese hamster ovary genome.
J. Biosc. Bioeng., 504-511 (2010).
162. Zhou, Y., Minami, T., Honda, K., Omasa, T., and Ohtake, H.
Systematic screening of Escherichia coli single-gene knockout mutants for improving recombinant whole-cell catalysts.
Appl. Microbiol. Biotechnol., 87: 647-655 (2010).
163. Park, J.-Y., Yamatani, M., Wadano, S., Takagi, Y., Honda, K., Omasa T., and Othake, H.
Effects of palindrome structure on Dhfr amplification in Chinese hamster ovary cells.
Process Biochem., 45: 1845-1851 (2010).
164. Kashihara, H., Kang, B., Omasa, T., Honda, K., Sameshima, Y., Kuroda, A., and Ohtake, H.
Electron microscopic analysis of heat-induced leakage of polyphosphate from a phoU mutant of Escherichia coli.
Biosci., Biotechnol. Biochem., 74: 865-868 (2010)
165. Zhou Y., Minami, T., Honda, K., Omasa, T. and Ohtake, H.
Enhancement of recombinant enzyme activity in cpxA-deficient mutant of Escherichia coli.
J. Biosc. Bioeng., 110: 403-407 (2010).
 166. Honda, K., Maya, S., Omasa, T., Hirota, R., Kuroda, A., and Ohtake, H.
Production of 2-deoxyribose 5-phosphate from fructose to demonstrate a potential of artificial bio-synthetic pathway using thermophilic enzymes.
J. Biotechnol., 148: 204-207 (2010).
167. Cappelletti, M., Fedi, S., Frascari, D., Ohtake, H., Turner, R.J., and Zannoni, D.
Analyses of both the alkB gene transcriptional start site and alkB promoter inducing properties in Rhodococcus sp. BCP1 as grown on n-alkanes.
Appl. Environ. Microbiol., 77:1619-1627(2011)
168. Zu Soh, Toshio Tsuji, Noboru Takiguchi, and Hisao Ohtake.
An artificial neural network approach for glomerular activity pattern prediction using the graph kernel method and the Gaussian mixture functions.
Chem. Senses,
36:413-424(2011)
169. Izawa, N., Serata, M., Sone, T., Omasa, T., and Ohtake, H.
Hyaluronic acid production by recombinant Streptococcus thermophilus.
J. Biosc. Bioeng., 111:665-670(2011)
170. Kang, B., Honda, K., Aki, T., Omasa, T., and Ohtake, H.
Simultaneous thermogravimetric and differential thermal analysis of microorganims for assessing their burning characteristics.
Thermochimica Acta, 517:115-120(2011)
171. Motomura, K., Hirota, R., Ohnaka, N., Okada, M., Ikeda, T., Morohoshi, M.,
Ohtake, H. and Kuroda, K.
Overproduction ofYjbB reduces the level of polyphosphate in Escherichia coli : a
hypothetical role of YjbB in phosphate export and polyphosphate accumulation.
FEMS Microbiol. Lett.,320: 25-32 (2011).
172. Restiawaty, E., Iwasa, Y., Maya, S., Honda, K., Omasa, T., Hirota, R., Kuroda, A.,
and Ohtake, H.
Feasibility of thermophilic ATP regeneration system using Thermus thermophilus
polyphosphate kinase.
Process Biochemistry, 46:1747-1752 (2011).
173. Kang, B., Honda, K., Okano, K., Aki, T., Omasa, T. and Ohtake, H.
Thermal analysis for differentiating between oleaginous and non-oleaginous
microorganisms.
Biochem. Eng. J., 57: 23-27 (2011).
174. N. Wangthamrongwit, K. Klinsakul, A. S. Vangnai, J. Wongkongkatep, P. Inprakhon,
K. Honda, H. Ohtake, J. Kato and T. Pongtharangkul
Bioproduction of Vanillin using an Organic Solvent-tolerant Brevibacillus agri 13.
Appl. Microbiol. Biotechnol., 93: 555-563 (2012).
175. Cao,Y., Kimura, S., Itoi, T., Honda, K., Ohtake, H., Omasa, T.
Construction of BAC-based physical map and analysis of chromosome rearrangement
in Chinese hamster ovary cell lines.
Biotechnol. Bioeng, 109: 1357-1367 (2012).
176. Y.Cao, S. Kimura, T. Itoi, K. Honda, H. Ohtake, T. Omasa
Fluorescence in situ hybridization using bacterial artificial chromosome (BAC)
clones for the analysis of chromosome rearrangement in Chinese hamster ovary cells.
Methods,56: 418-423 (2012).
177. E. Restiawaty, K. Honda, K. Okano, R. Hirota, T. Omasa, A. Kuroda, H. Ohtake
Construction of membrane-anchoring fusion protein of Thermococcus kodakaraensis
KOD1glycerol kinase and its application to repetitive batchwise reactions.
J. Biosc. Bioeng.,113: 521-525 (2012).
178. Onitsuka, M., Kim, W.-D., Ozaki, H., Kawaguchi, A., Honda, K., Kajiura, H.,
Fujiyama, K., Asano, R., Kumagai, I., Ohtake, H., and Omasa, T.
Enhancement of sialylation on humanized IgG-like bispecific antibody by
overexpression of a2,6-sialyltransferase derived from Chinese hamster ovary cells.
Appl. Microbiol. Biotechnol., 94: 69-80 (2012).
179. Siriphongphaew, A., Pisnupong, P., Wongkongkatep, J., Inprakhon, P., Vangnai,
A. Honda, K.., Ohtake, H., Kato, J., Ogawa, J., Shimizu, S., Ulracher, V., Schmid,
R., and Pongtharangkul, T.
Development of a whole-cell biocatalyst co-expressing the P450 monooxygenase a
nd glucose dehydrogenase for synthesis of epoxyhexane.
Appl. Microbiol. Biotechnol., 95: 357-367 (2012)..
180. Honda, K., Imura, M., Okano, K., Omasa, T., Kato, J., and Ohtake, H. (2012) Identification of the replicon of 111-kb circular plasmid from Rhodococcus opacus B-4.
Biosci. Biotechnol. Biochem
., 76, 1758-1764.(2012).
181. Ye, X., Honda, K., Sakai, T., Okano, K., Omasa, T., Hirota, R., Kuroda, A. and Ohtake, H. (2012) Synthetic metabolic engineering-a novel technology for designing a chimeric metabolic pathway.
Microbial Cell Fact
. 11, 120.(2012).
182. Ye, X., Honda, K., Morimoto, Y., Okano, K. and Ohtake, H. (2013) Direct conversion of glucose to malate by synthetic metabolic engineering.
J. Biotechnol.164,34-40.(2013).
183. Ninh, P.H., Honda, K., Yokohigashi, Y., Okano, K., Omasa, T. and Ohtake, H. (2013) Development of continuous bioconversion system using thermophilic whole-cell biocatalyst. Appl. Environ. Microbiol. 79: 1996-2001 (2013).
184. Okano, K., Uemoto, M., Kagami, J., Miura, K., Aketo, T., Toda, M., Honda, K. and Ohtake, H. (2013) Novel technique for phosphorus recovery from aqueous solutions using amorphous calcium silicate hydrates (A-CSHs).
Water Res
. 47,2251-2259.
(2013)
185. Hibino, A. and Ohtake, H.
Utilization of hydrophobic bacterium Rhodococcus rhodochrous NBRC15564
as whole-cell catalyst in solvent-free organic media.
Process Biochem., 48:838-843(2013)
186. Hibino, A., Petri, R., Büchs, J., and Ohtake, H.
Production of uroporphyrinogen III from 5-aminolevulinic acid using Escherichia coli
expressing thermostable enzymes

Appl. Microbiol. Biotechnol.,
97:7337-7344(2013)
187. Lee, K-H., Onitsuka, M., Honda, K., Ohtake, H. and Omasa, T.
Rapid Construction of Transgene-amplified CHO Cell Lines by Cell Cycle Checkpoint Engineering.
Appl. Microbiol. Biotechnol., 97:5731-5141(2013)
188. Haredy, A.M. Takenaka, N., Yamada, H., Sakoda, Y., Okamatsu, M., Yamamoto, N.,
Omasa, T., Ohtake, H., Mori, Y., Kida, H., Yamanishi, K., Okamoto, S.
MDCK cell culture-derived formalin-inactivated influenza whole virion vaccine from an influenza virus library conferred cross-protective immunity by intranasal administration in mice.
Clinic. Vacci. Immunol., in press.
189. Lee, K-H., Tsutsui, T., Honda, K., Asano, R., Kumagai, I., Ohtake, H. and Omasa, T.
Generation of High-producing Cell Lines by Overexpression of Cell Division Cycle 25 Homolog A in Chinese Hamster Ovary Cells.
J. Biosc. Bioeng., 116: 754-760 (2013).
190. Morimoto, Y., Honda, K., Ye X., Okano, K., and Ohtake, H.
Directed evolution of thermotolerant malic enzyme for improved malate production.
J. Biosc. Bioeng., 117,147-152(2013)
191. Krutsakorn, B., Honda, K., Ye, X., Imagawa, T., Bei, X., Okano, K., and Ohtake, H.
In vitro production of n-butanol from glucose.
Metabolic Eng.,20: 84-91 (2013).
192. Krutsakorn, B., Imagawa, T., Honda, K., Okano, K., and Ohtake, H.
Construction of an in vitro bypassed pyruvate decarboxylation pathway using thermostable enzyme modules and its application to N-acetylglutamate production.
Microb. Cell Fact., 12,91(2013)
193. Haredy, A.M., Nishizawa, A., Honda, K., Ohya, T., Ohtake, H. and Omasa, T.
Improved antibody production in Chinese hamster ovary cells by ATF4 overexpression.
Cytotechnology, 65: 993-1002 (2013).
194. Lee, K.H., Tsutsui, T., Honda, K., Ohtake, H., Omasa, T.
Overexpression of Mutant Cell Division Cycle 25 Homolog B enhances the Efficiency of Gene Amplification in Chinese Hamster Ovary Cells.
Cytotechnology, 65: 1017-1026 (2013).
195. Onitsuka, M., Kawaguchi, A., Asano, R., Kumagai, I., Honda, K., Ohtake, H., and Omasa, T.
Glycosylation analysis of an aggregated antibody produced by Chinese hamster ovary cells in bioreactor culture.
J. Biosc. Bioeng., 117, 639-644.(2014)
196. Tsuji, N., Honda, K., Wada, M., Okano, K., and Ohtake, H.
Isolation and characterization of a thermotolerant ene reductase from Geobacillus sp. 30 and its heterologous expression in Rhodococcus opacus.
Appl. Microb. Biotechnol., 98: 5925-5935(2014)
197. Ninh, P.H., Honda, K., Sakai, T., Okano, K., Ohtake, H. Assembly and multiple gene expression of thermophilic enzymes in Escherichia coli for in vitro metabolic engineering. Biotechnol. Bioeng.in press
12 August, 2014

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OHTAKE LAB

Biochemical Engineering Lab
Dept.of Biotechnology
Graduate School of Engineering,
Osaka University
Yamadaoka 2-1, Suita Osaka
565-0871 Japan
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