業績 / Publications

原著論文

2015年

  • In vivo studies
    Suzuki A, Kato Y, Matsuura T, Watanabe H (2015)
    Growth evaluation method by live imaging of Daphnia magna and its application to the estimation of an insect growth regulator. J Appl Toxicol 35: 68-74

    Peerakietkhajorn S, Tsukada K, Kato Y, Matsuura T, Watanabe H (2015)
    Symbiotic bacteria contribute to increasing the population size of a freshwater crustacean, Daphnia magna. Environ Microbiol Rep 7: 364-372

    Peerakietkhajorn S, Kato Y, Kasalicky V, Matsuura T, Watanabe H (2015)
    Betaproteobacteria Limnohabitans strains increase fecundity in the crustacean Daphnia magna: symbiotic relationship between major bacterioplankton and zooplankton in freshwater ecosystem. Environ Microbiol

    Nakanishi T, Kato Y, Matsuura T, Watanabe H (2015)
    TALEN-mediated homologous recombination in Daphnia magna. Sci Rep 5: 18312

    Naitou A, Kato Y, Nakanishi T, Matsuura T, Watanabe H (2015)
    Heterodimeric TALENs induce targeted heritable mutations in the crustacean Daphnia magna. Biol Open 4: 364-369

  • In vivo studies
    Uyeda A, Watanabe T, Kato Y, Watanabe H, Yomo T, Hohsaka T, Matsuura T (2015)
    Liposome-based in vitro evolution of aminoacyl-tRNA synthetase for enhanced pyrrolysine derivative incorporation. Chembiochem 16: 1797-1802

    Fujii S, Matsuura T, Yomo T (2015)
    Membrane Curvature Affects the Formation of alpha-Hemolysin Nanopores. ACS Chem Biol 10: 1694-1701

    Fujii S, Matsuura T, Yomo T (2015)
    In vitro directed evolution of alpha-hemolysin by liposome display. Biophysics 11: 67-72

2014年

  • In vivo studies
    Torner K, Nakanishi T, Matsuura T, Kato Y, Watanabe H (2014)
    Optimization of mRNA design for protein expression in the crustacean Daphnia magna. Mol Genet Genomics

    Nakanishi T, Kato Y, Matsuura T, Watanabe H (2014)
    CRISPR/Cas-Mediated Targeted Mutagenesis in Daphnia magna. PLoS One 9: e98363

    Asada M, Kato Y, Matsuura T, Watanabe H (2014)
    Early Embryonic Expression of a Putative Ecdysteroid-Phosphate Phosphatase in the Water Flea, Daphnia magna (Cladocera: Daphniidae). J Insect Sci 14: 181

    Asada M, Kato Y, Matsuura T, Watanabe H (2014)
    Visualization of ecdysteroid activity using a reporter gene in the crustacean, Daphnia. Mar Environ Res 93: 118-122

    Toyota K, Kato Y, Miyakawa H, Yatsu R, Mizutani T, Ogino Y, Miyagawa S, Watanabe H, Nishide H, Uchiyama I, Tatarazako N, Iguchi T.(2014) Molecular impact of juvenile hormone agonists on neonatal Daphnia magna, J Appl Toxicol., May;34(5):537-44.

  • In vitro studies
    Usui, K., Ichihashi, N., Kazuta, Y., Matsuura, T., and Yomo, T. (2014) Effects of ribosomes on the kinetics of Qbeta replication, FEBS Lett 588, 117-123.

    Fujii S, Matsuura T, Sunami T, Nishikawa T, Kazuta Y, Yomo T (2014)
    Liposome display for in vitro selection and evolution of membrane proteins. Nat Protoc 9: 1578-1591

    Kazuta Y, Matsuura T, Ichihashi N, Yomo T (2014)
    Synthesis of milligram quantities of proteins using a reconstituted in vitro protein synthesis system. J Biosci Bioeng 118: 554-557

    Nishimura K, Matsuura T, Sunami T, Fujii S, Nishimura K, Suzuki H, Yomo T (2014)
    Identification of giant unilamellar vesicles with permeability to small charged molecules. Rsc Adv 4: 35224-35232

    Okano T, Matsuura T, Suzuki H, Yomo T (2014)
    Cell-free protein synthesis in a microchamber revealed the presence of an optimum compartment volume for high-order reactions. ACS Synth Biol 3: 347-352

    Soga H, Fujii S, Yomo T, Kato Y, Watanabe H, Matsuura T (2014)
    In vitro membrane protein synthesis inside cell-sized vesicles reveals the dependence of membrane protein integration on vesicle volume. ACS Synth Biol 3: 372-379

    Usui K, Ichihashi N, Kazuta Y, Matsuura T, Yomo T (2014)
    Effects of ribosomes on the kinetics of Qbeta replication. FEBS Lett 588: 117-123

    Uno K, Sunami T, Ichihashi N, Kazuta Y, Matsuura T, Yomo T (2014)
    The evolutionary enhancement of genotype-phenotype linkages in the presence of multiple copies of genetic material. Chembiochem 15: 2281-2288

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2013年

  • In vivo studies
    Asada, M., Kato, Y., Matsuura, T., and Watanabe, H. (2013) Visualization of ecdysteroid activity using a reporter gene in the crustacean, Daphnia, Mar Environ Res.

    Toyota, K., Kato, Y., Sato, M., Sugiura, N., Miyagawa, S., Miyakawa, H., Watanabe, H., Oda, S., Ogino, Y., Hiruta, C., Mizutani, T., Tatarazako, N., Paland, S., Jackson, C., Colbourne, J. K., and Iguchi, T. (2013) Molecular cloning of doublesex genes of four cladocera (water flea) species, BMC Genomics 14, 239.

    Toyota, K., Kato, Y., Miyakawa, H., Yatsu, R., Mizutani, T., Ogino, Y., Miyagawa, S., Watanabe, H., Nishide, H., Uchiyama, I., Tatarazako, N., and Iguchi, T. (2013) Molecular impact of juvenile hormone agonists on neonatal Daphnia magna, J Appl Toxicol.

    Hotta, K., Nashimoto, A., Yasumura, E., Suzuki, M., Azuma, M., Iizumi, Y., Shima, D., Nabeshima, R., Hiramoto, M., Okada, A., Sakata-Sogawa, K., Tokunaga, M., Ito, T., Ando, H., Sakamoto, S., Kabe, Y., Aizawa, S., Imai, T., Yamaguchi, Y., Watanabe, H., and Handa, H. (2013) Vesnarinone suppresses TNFalpha mRNA expression by inhibiting valosin-containing protein, Mol Pharmacol 83, 930-938.
  • In vitro studies
    Usui, K., Ichihashi, N., Kazuta, Y., Matsuura, T., and Yomo, T. (2013) Kinetic model of double-stranded RNA formation during long RNA replication by Qbeta replicase, FEBS Lett 587, 2565-2571.

    Soga, H., Fujii, S., Yomo, T., Kato, Y., Watanabe, H., and Matsuura, T. (2013) In Vitro Membrane Protein Synthesis Inside Cell-Sized Vesicles Reveals the Dependence of Membrane Protein Integration on Vesicle Volume, ACS Synth Biol.

    Okano, T., Matsuura, T., Suzuki, H., and Yomo, T. (2013) Cell-free Protein Synthesis in a Microchamber Revealed the Presence of an Optimum Compartment Volume for High-order Reactions, ACS Synth Biol.

    Ichihashi, N., Usui, K., Kazuta, Y., Sunami, T., Matsuura, T., and Yomo, T. (2013) Darwinian evolution in a translation-coupled RNA replication system within a cell-like compartment, Nat Commun 4, 2494.

    Fujii, S., Matsuura, T., Sunami, T., Kazuta, Y., and Yomo, T. (2013) In vitro evolution of alpha-hemolysin using a liposome display, Proc Natl Acad Sci U S A 110, 16796-16801.

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2012年

  • In vivo studies
    Kato, Y., Matsuura, T., and Watanabe, H. (2012) Genomic integration and germline transmission of plasmid injected into crustacean Daphnia magna eggs, Plos One 7, e45318.

    Tazaki, J., Jinnai, T., Tada, T., Kato, Y., Makiyama, T., Ikeda, T., Yamane, K., Naruse, Y., Takahashi, K., Watanabe, H., Kimura, T., and Horiuchi, H. (2012) Prediction of clopidogrel low responders by a rapid CYP2C19 activity test, J Atheroscler Thromb 19, 186-193.

    Taylor, J. A., Richter, C. A., Suzuki, A., Watanabe, H., Iguchi, T., Coser, K. R., Shioda, T., and vom Saal, F. S. (2012) Dose-related estrogen effects on gene expression in fetal mouse prostate mesenchymal cells, Plos One 7, e48311.

    Nakamura, T., Miyagawa, S., Katsu, Y., Watanabe, H., Mizutani, T., Sato, T., Morohashi, K., Takeuchi, T., Iguchi, T., and Ohta, Y. (2012) Wnt family genes and their modulation in the ovary-independent and persistent vaginal epithelial cell proliferation and keratinization induced by neonatal diethylstilbestrol exposure in mice, Toxicology 296, 13-19.

    Kakuta, H., Tanaka, M., Chambon, P., Watanabe, H., Iguchi, T., and Sato, T. (2012) Involvement of gonadotropins in the induction of hypertrophy-hyperplasia in the interstitial tissues of ovaries in neonatally diethylstilbestrol-treated mice, Reprod Toxicol 33, 35-44.
  • In vitro studies
    Terasawa, H., Nishimura, K., Suzuki, H., Matsuura, T., and Yomo, T. (2012) Coupling of the fusion and budding of giant phospholipid vesicles containing macromolecules, Proc Natl Acad Sci U S A 109, 5942-5947.

    Okano, T., Matsuura, T., Kazuta, Y., Suzuki, H., and Yomo, T. (2012) Cell-free protein synthesis from a single copy of DNA in a glass microchamber, Lab Chip 12, 2704-2711.

    Nishiyama, K., Ichihashi, N., Matsuura, T., Kazuta, Y., and Yomo, T. (2012) alpha-Complementation in an artificial genome replication system in liposomes, Chembiochem 13, 2701-2706.

    Nishimura, K., Matsuura, T., Nishimura, K., Sunami, T., Suzuki, H., and Yomo, T. (2012) Cell-free protein synthesis inside giant unilamellar vesicles analyzed by flow cytometry, Langmuir 28, 8426-8432.

    Nishikawa, T., Sunami, T., Matsuura, T., Ichihashi, N., and Yomo, T. (2012) Construction of a gene screening system using giant unilamellar liposomes and a fluorescence-activated cell sorter, Anal Chem 84, 5017-5024.

    Matsuura, T., Hosoda, K., Kazuta, Y., Ichihashi, N., Suzuki, H., and Yomo, T. (2012) Effects of compartment size on the kinetics of intracompartmental multimeric protein synthesis, ACS Synth Biol 1, 431-437.

    Kobori, S., Ichihashi, N., Kazuta, Y., Matsuura, T., and Yomo, T. (2012) Kinetic analysis of aptazyme-regulated gene expression in a cell-free translation system: modeling of ligand-dependent and -independent expression, RNA 18, 1458-1465.

    Hirata, K., Ichii, T., Suzuki, H., Matsuura, T., Hosoda, K., and Yomo, T. (2012) Fractal-shaped microchannel design for a kinetic analysis of biochemical reaction in a delay line, Microfluidics and Nanofluidics 13, 273-278.

    Bansho, Y., Ichihashi, N., Kazuta, Y., Matsuura, T., Suzuki, H., and Yomo, T. (2012) Importance of parasite RNA species repression for prolonged translation-coupled RNA self-replication, Chem Biol 19, 478-487.

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2011年

  • In vivo studies
    Kato, Y., Shiga, Y., Kobayashi, K., Tokishita, S., Yamagata, H., Iguchi, T., and Watanabe, H. (2011) Development of an RNA interference method in the cladoceran crustacean Daphnia magna, Dev Genes Evol 220, 337-345.

    Kato, Y., Kobayashi, K., Watanabe, H., and Iguchi, T. (2011) Environmental sex determination in the branchiopod crustacean Daphnia magna: deep conservation of a Doublesex gene in the sex-determining pathway, PLoS Genet 7, e1001345.

    Taneda, T., Zhu, W., Cao, Q., Watanabe, H., Yamaguchi, Y., Handa, H., and Wada, T. (2011) Erythropoiesis is regulated by the transcription elongation factor Foggy/Spt5 through gata1 gene regulation, Genes Cells 16, 231-242.

    Oda, S., Kato, Y., Watanabe, H., Tatarazako, N., and Iguchi, T. (2011) Morphological changes in Daphnia galeata induced by a crustacean terpenoid hormone and its analog, Environ Toxicol Chem 30, 232-238.
  • In vitro studies
    Yanagida, H., Matsuura, T., Kazuta, Y., and Yomo, T. (2011) In vitro selection of proteins that undergo covalent labeling with small molecules by thiol-disulfide exchange by using ribosome display, Chembiochem 12, 962-969.

    Matsuura, T., Hosoda, K., Ichihashi, N., Kazuta, Y., and Yomo, T. (2011) Kinetic analysis of beta-galactosidase and beta-glucuronidase tetramerization coupled with protein translation, J Biol Chem 286, 22028-22034.

    Hosoda, K., Matsuura, T., Suzuki, H., and Yomo, T. (2011) Origin of lognormal-like distributions with a common width in a growth and division process, Phys Rev E Stat Nonlin Soft Matter Phys 83, 031118.

    Caschera, F., Sunami, T., Matsuura, T., Suzuki, H., Hanczyc, M. M., and Yomo, T. (2011) Programmed vesicle fusion triggers gene expression, Langmuir 27, 13082-13090.

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2010年

  • In vivo studies
    Kato, Y., Kobayashi, K., Watanabe, H., and Iguchi, T. (2010) Introduction of foreign DNA into the water flea, Daphnia magna, by electroporation, Ecotoxicology 19, 589-592.

    Kato, Y., Kobayashi, K., Oda, S., Tatarazako, N., Watanabe, H., and Iguchi, T. (2010) Sequence divergence and expression of a transformer gene in the branchiopod crustacean, Daphnia magna, Genomics 95, 160-165.

    Hikake, T., Hayashi, S., Chambon, P., Watanabe, H., Iguchi, T., and Sato, T. (2010) Differential involvement of insulin-like growth factor-I and estrogen on prolactin cells in the mouse anterior pituitary, Exp Biol Med (Maywood) 235, 974-980.
  • In vitro studies
    Urabe, H., Ichihashi, N., Matsuura, T., Hosoda, K., Kazuta, Y., Kita, H., and Yomo, T. (2010) Compartmentalization in a water-in-oil emulsion repressed the spontaneous amplification of RNA by Q beta replicase, Biochemistry 49, 1809-1813.

    Sunami, T., Hosoda, K., Suzuki, H., Matsuura, T., and Yomo, T. (2010) Cellular compartment model for exploring the effect of the lipidic membrane on the kinetics of encapsulated biochemical reactions, Langmuir 26, 8544-8551.

    Sunami, T., Caschera, F., Morita, Y., Toyota, T., Nishimura, K., Matsuura, T., Suzuki, H., Hanczyc, M. M., and Yomo, T. (2010) Detection of association and fusion of giant vesicles using a fluorescence-activated cell sorter, Langmuir 26, 15098-15103.

    Ichihashi, N., Matsuura, T., Hosoda, K., and Yomo, T. (2010) Identification of two forms of Q{beta} replicase with different thermal stabilities but identical RNA replication activity, J Biol Chem 285, 37210-37217.

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2009年

  • In vivo studies
    Kuramori, C., Hase, Y., Hoshikawa, K., Watanabe, K., Nishi, T., Hishiki, T., Soga, T., Nashimoto, A., Kabe, Y., Yamaguchi, Y., Watanabe, H., Kataoka, K., Suematsu, M., and Handa, H. (2009) Mono-(2-ethylhexyl) phthalate targets glycogen debranching enzyme and affects glycogen metabolism in rat testis, Toxicol Sci 109, 143-151.

    Kirigaya, A., Kim, H., Hayashi, S., Chambon, P., Watanabe, H., Lguchi, T., and Sato, T. (2009) Involvement of estrogen receptor beta in the induction of polyovular follicles in mouse ovaries exposed neonatally to diethylstilbestrol, Zoolog Sci 26, 704-712.

    Kim, H., Nakajima, T., Hayashi, S., Chambon, P., Watanabe, H., Iguchi, T., and Sato, T. (2009) Effects of diethylstilbestrol on programmed oocyte death and induction of polyovular follicles in neonatal mouse ovaries, Biol Reprod 81, 1002-1009.
  • In vitro studies
    Nishimura, K., Hosoi, T., Sunami, T., Toyota, T., Fujinami, M., Oguma, K., Matsuura, T., Suzuki, H., and Yomo, T. (2009) Population analysis of structural properties of giant liposomes by flow cytometry, Langmuir 25, 10439-10443.

    Matsuura, T., Kazuta, Y., Aita, T., Adachi, J., and Yomo, T. (2009) Quantifying epistatic interactions among the components constituting the protein translation system, Mol Syst Biol 5, 297.

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2008年以前

こちらに記載

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総説・著書

  • In vivo studies
    Casciano, D. A., and Sahu, S. C. (2011) Handbook of systems toxicology, Wiley, Chichester, West Sussex ; Hoboken, NJ.
  • In vitro studies
    Nishikawa, T., Sunami, T., Matsuura, T., and Yomo, T. (2012) Directed Evolution of Proteins through In Vitro Protein Synthesis in Liposomes, J Nucleic Acids 2012, 923214.

    Matsuura, T., Ichihashi, N., Sunami, T., Kita, H., Suzuki, H., and Yomo, T. (2011) Evolvability and Self-Replication of Genetic Information in Liposomes, in The Minimal Cell (Luisi, P. L., and Stano, P., Eds.), pp 275-287, Springer Netherlands.

    Sunami, T., Matsuura, T., Suzuki, H., and Yomo, T. (2010) Synthesis of functional proteins within liposomes, Methods Mol Biol 607, 243-256.

    Yanagida, H., Matsuura, T., and Yomo, T. (2010) Ribosome display for rapid protein evolution by consecutive rounds of mutation and selection, Methods Mol Biol 634, 257-267.

    Ichihashi, N., Matsuura, T., Kita, H., Sunami, T., Suzuki, H., and Yomo, T. (2010) Constructing partial models of cells, Cold Spring Harb Perspect Biol 2, a004945.

    Sunami, T., Kita, H., Hosoda, K., Matsuura, T., Suzuki, H., and Yomo, T. (2009) Chapter 2 - Detection and analysis of protein synthesis and RNA replication in giant liposomes, Methods Enzymol 464, 19-30.

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